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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_11740855_11740996_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11740855 - 11740996
Intron Length:
142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGGGG
5'SS Class:
major
3'SS Sequence:
TTTTTTTCACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTTTTCACC
Flanking Amino Acid:
VTGILGAYIAGITLKWHWLA
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
53.3
43.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
87.1
0.83
0.8
82.4
34
Minor 5ss
34.8
-1.7
3.5
46.9
48.5
Minor BPS
69.1
0.58
1.7
81.25
33.5

Associated Gene:

Gene:
SLC2A8
Ensembl Gene ID:
ENSAPLG00000012226
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012757
11737483 - 11745081
7599