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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_11743654_11744247_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11743654 - 11744247
Intron Length:
594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTAATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGCATTTAATC
Flanking Amino Acid:
AVVSLGLFVAGFAVGWGPVP
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.2
35.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.1
0.72
0.9
78.9
38.5
Minor 5ss
26.7
-2.7
3
28.5
38.4
Minor BPS
61.3
0.33
1.5
68.55
37.2

Associated Gene:

Gene:
SLC2A8
Ensembl Gene ID:
ENSAPLG00000012226
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012757
11737483 - 11745081
7599