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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_11744394_11744551_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11744394 - 11744551
Intron Length:
158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGCATC
5'SS Class:
major
3'SS Sequence:
TCCCTTCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTTATCATAATA
Flanking Amino Acid:
LVTKEFHDLIALISYGTFWL
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
71.7
38.4
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
78.4
0.64
0.7
76.5
25.6
Minor 5ss
45.8
-0.4
2.8
62.8
36.6
Minor BPS
64
0.44
1.6
76.76
33.9

Associated Gene:

Gene:
SLC2A8
Ensembl Gene ID:
ENSAPLG00000012226
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012757
11737483 - 11745081
7599