Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1313107_1313973_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1313107 - 1313973

Intron Length:

867

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGAGAT

5'SS Class:

strong_major

3'SS Sequence:

CTTCCCTCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACACAT

U12 Branch Point Sequence:

ACACCCACACAT

Flanking Amino Acid:

SPVRVQAVDSGGPAEKAGLQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

76.9

31.6

Major BPS

57.6

0.19

64.6

32.2

Major PPT

78.3

0.64

0.7

72.9

25.2

Minor 5ss

32.2

-2

3.5

44.1

44.7

Minor BPS

-0.7

1.9

51.76

41.8

Associated Gene:

Gene:

RGS3

Ensembl Gene ID:

ENSAPLG00000004884

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005115

1258623 - 1316460

57838