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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1342772_1343250_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1342772 - 1343250
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCGTCC
5'SS Class:
weak_major
3'SS Sequence:
GTTTTCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CAGTTTTTCACT
Flanking Amino Acid:
FVAPLKESLEVYRREQKGKK
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.2
60.1
39.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
86.6
0.82
0.7
85.4
29.4
Minor 5ss
49.6
-0
2.8
68.6
42.5
Minor BPS
53.1
0.18
1.8
67.7
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019878
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027330
1341417 - 1344994
3578