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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1348920_1349136_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1348920 - 1349136
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTGAG
5'SS Class:
major
3'SS Sequence:
CCAATTTCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCACAT
U12 Branch Point Sequence:
TCCCATCCAATT
Flanking Amino Acid:
ASNLIYPIFVTDSPDAVEPI
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.3
68.4
38.7
Major BPS
65.3
0.38
1.1
72.6
33.1
Major PPT
75.2
0.57
0.9
69
36.7
Minor 5ss
28
-2.5
3
30.3
36.2
Minor BPS
41.3
-0.5
1.8
55.01
41.2

Associated Gene:

Gene:
ALAD
Ensembl Gene ID:
ENSAPLG00000007230
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007520
1348772 - 1355740
6969