About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1349188_1350738_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1349188 - 1350738
Intron Length:
1551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTGCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
CCTTGTTGAACT
Flanking Amino Acid:
EPIASLPGQARYGVNKLEGM
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
73
0.52
0.8
65.2
36.3
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
53.8
0.2
1.9
71.98
45.3

Associated Gene:

Gene:
ALAD
Ensembl Gene ID:
ENSAPLG00000007230
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007520
1348772 - 1355740
6969