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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1352448_1352748_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1352448 - 1352748
Intron Length:
301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGTG
5'SS Class:
strong_major
3'SS Sequence:
CCGTTCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAT
U12 Branch Point Sequence:
TGGCCCTCATGG
Flanking Amino Acid:
ALISNDMGNKVSVMSYSAKF
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
72.2
39.5
Major BPS
70
0.5
1.1
71.2
35.2
Major PPT
78.7
0.65
0.8
72.8
32
Minor 5ss
34.5
-1.8
3.4
45.9
49.3
Minor BPS
42.4
-0.7
2.1
45.92
46.1

Associated Gene:

Gene:
ALAD
Ensembl Gene ID:
ENSAPLG00000007230
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007520
1348772 - 1355740
6969