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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1353533_1354026_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1353533 - 1354026
Intron Length:
494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGTGAG
U12 Branch Point Sequence:
CTCTCCTCACAG
Flanking Amino Acid:
GARGLGLRAVDRDVREGADM
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
72
34.7
Major BPS
47.9
-0.1
1.7
45
47.8
Major PPT
75.1
0.57
0.8
68.2
32.1
Minor 5ss
28.2
-2.5
2.7
28.9
37.2
Minor BPS
46.5
-0.4
2
52.48
47.8

Associated Gene:

Gene:
ALAD
Ensembl Gene ID:
ENSAPLG00000007230
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007520
1348772 - 1355740
6969