Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_137959_138083_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

137959 - 138083

Intron Length:

125

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGCAAC

5'SS Class:

strong_major

3'SS Sequence:

CCTCTCTCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTGAT

U12 Branch Point Sequence:

CTCTCTGCAACC

Flanking Amino Acid:

HQKQQMLSMEKHKEEPKVPD

Intron Amino Acid Position:

190

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

75.1

35.1

Major BPS

68.9

0.47

1.2

60.7

45.9

Major PPT

77.5

0.62

0.7

71.6

26.5

Minor 5ss

41.4

-1

2.9

52.3

38.8

Minor BPS

47.7

-0.1

2.2

61.68

44.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002512

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002355

125920 - 139739

13820