Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1379882_1379966_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1379882 - 1379966

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGAAAG

5'SS Class:

strong_major

3'SS Sequence:

GGCCCCTTGGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCAAT

U12 Branch Point Sequence:

CTTTCAATACTT

Flanking Amino Acid:

EIYGLNFSPNGYHVATGSGD

Intron Amino Acid Position:

433

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

71.6

40.1

Major BPS

76.9

0.67

1.2

31.9

Major PPT

62.5

0.28

57.1

38.6

Minor 5ss

32.4

-2

2.9

32.3

Minor BPS

48.4

-0

2.1

73.84

43.2

Associated Gene:

Gene:

PRPF4

Ensembl Gene ID:

ENSAPLG00000006534

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006807

1379392 - 1386880

7489