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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1380075_1380224_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1380075 - 1380224
Intron Length:
150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
TCTCTCTTTTCA
Flanking Amino Acid:
FHTDGSLAGTGGLDAFGRVW
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.8
38.1
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
89.8
0.9
0.6
88
21.8
Minor 5ss
37.9
-1.4
2.9
40.9
45.3
Minor BPS
41.2
-0.7
3.5
64.02
42.2

Associated Gene:

Gene:
PRPF4
Ensembl Gene ID:
ENSAPLG00000006534
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006807
1379392 - 1386880
7489