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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1380348_1381289_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1380348 - 1381289
Intron Length:
942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGGAGA
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
TTTAGTTGGACA
Flanking Amino Acid:
HPSGRFLGTTCYDHSWRLWD
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
64
41.6
Major BPS
66.1
0.4
1
73
31.5
Major PPT
88.3
0.86
0.7
84.9
29.9
Minor 5ss
37.9
-1.4
3.1
45.3
44.7
Minor BPS
48.9
-0
2
67.65
38.8

Associated Gene:

Gene:
PRPF4
Ensembl Gene ID:
ENSAPLG00000006534
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006807
1379392 - 1386880
7489