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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_138164_138299_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138164 - 138299
Intron Length:
136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGTGC
5'SS Class:
major
3'SS Sequence:
ACTCTCTCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCATCAC
U12 Branch Point Sequence:
GCTGCCATCACT
Flanking Amino Acid:
ASPLPYDKISPGDKTLAQSA
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
65.2
41.8
Major BPS
53.4
0.09
1.1
57.3
37.7
Major PPT
79.8
0.67
0.8
73.6
30.7
Minor 5ss
37.6
-1.4
3.3
50.7
46
Minor BPS
48.6
-0
2.2
69.34
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002512
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002355
125920 - 139739
13820