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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1383692_1384614_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1383692 - 1384614
Intron Length:
923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAGGTTTG
5'SS Class:
major
3'SS Sequence:
CATTTGGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TATTGTTTCATT
Flanking Amino Acid:
QRQELHKSLRSLNNFCSQIG
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.1
63.4
43.8
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
75.7
0.58
1
68.9
41.6
Minor 5ss
43.7
-0.7
3.1
53.8
44.6
Minor BPS
52.1
0.15
2.1
76.34
41.1

Associated Gene:

Gene:
PRPF4
Ensembl Gene ID:
ENSAPLG00000006534
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006807
1379392 - 1386880
7489