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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_138385_138877_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
138385 - 138877
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
CTCCCATCGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
TACTCCTGACAT
Flanking Amino Acid:
ALIVAAVCWCRLQKEVRLAQ
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
65.2
0.34
1
57.9
37.5
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
52.1
0.14
1.9
71.51
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002512
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002355
125920 - 139739
13820