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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1430552_1432589_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1430552 - 1432589
Intron Length:
2038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTTCTCTTCCTA
Flanking Amino Acid:
ARVLHAEQEKHMLPVDRGWD
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
67.7
37.5
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
83.2
0.75
0.7
77.2
31.5
Minor 5ss
31.6
-2.1
3.1
40.3
45.3
Minor BPS
41.7
-0.6
3.5
67.76
39.4

Associated Gene:

Gene:
FKBP15
Ensembl Gene ID:
ENSAPLG00000005688
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026142
1415357 - 1440055
24699