About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1435003_1435323_F


Intron Information:

Intron Rank:
21

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
1435003 - 1435323

Intron Length:
321

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AGG|GTATGTCCT

5'SS Class:
major

3'SS Sequence:
TTCTATATTGCAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TCTATAT

U12 Branch Point Sequence:
TCTTCTATATTG

Flanking Amino Acid:
LKVEKETLERNLAERKKKSL

Intron Amino Acid Position:
735

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
77.6
0.65
1
68
42.9

Major BPS
66.7
0.41
1.1
63.2
42.8

Major PPT
83.1
0.74
0.8
77.6
35

Minor 5ss
42.5
-0.8
2.8
51.6
44.8

Minor BPS
49.3
-0.1
1.9
59.57
43.1

Associated Gene:

Gene:
FKBP15

Ensembl Gene ID:

Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

1415357 - 1440055
24699

1415357 - 1440055
24699