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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1447684_1448043_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1447684 - 1448043
Intron Length:
360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGAGAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
CGAGTGCTAACA
Flanking Amino Acid:
STMTASDLEKMGVTEAGLQR
Intron Amino Acid Position:
611

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
69.7
35.3
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
82.8
0.74
0.7
77.1
24.9
Minor 5ss
29.7
-2.3
3.5
40.9
45.7
Minor BPS
40.7
-0.7
2.3
48.78
41.9

Associated Gene:

Gene:
LRSAM1
Ensembl Gene ID:
ENSAPLG00000005497
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046007
1446718 - 1469843
23126
ENSAPLT00000045132
1446718 - 1469843
23126
ENSAPLT00000005710
1447029 - 1470969
23941