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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1451864_1453376_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1451864 - 1453376
Intron Length:
1513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
ATCTTCTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATGTCAGTAAAA
Flanking Amino Acid:
DLMHRQIRNQIKLIETELLQ
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
74.8
38.1
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
74.8
0.56
0.9
73.8
36.2
Minor 5ss
34.2
-1.8
2.8
40.6
45.6
Minor BPS
47.3
-0.2
2.3
64.37
41.6

Associated Gene:

Gene:
LRSAM1
Ensembl Gene ID:
ENSAPLG00000005497
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046007
1446718 - 1469843
23126
ENSAPLT00000045132
1446718 - 1469843
23126
ENSAPLT00000005710
1447029 - 1470969
23941