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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1454291_1455777_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1454291 - 1455777
Intron Length:
1487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTGG
5'SS Class:
major
3'SS Sequence:
CATCTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
AACTCCATGACA
Flanking Amino Acid:
RQDLVNQACSSLAEMDQKFQ
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
54.8
44.8
Major BPS
66.1
0.4
1
73
31.5
Major PPT
82.7
0.74
0.8
76.8
31.4
Minor 5ss
34.4
-1.8
3.5
46.9
48.5
Minor BPS
59.7
0.3
1.6
66.84
39.1

Associated Gene:

Gene:
LRSAM1
Ensembl Gene ID:
ENSAPLG00000005497
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046007
1446718 - 1469843
23126
ENSAPLT00000045132
1446718 - 1469843
23126
ENSAPLT00000005710
1447029 - 1470969
23941