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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1461940_1463419_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1461940 - 1463419
Intron Length:
1480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCACC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTGGAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAC
U12 Branch Point Sequence:
TGAGAATAAACT
Flanking Amino Acid:
RVLAHIRTLKMLTLDASSMT
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.5
38.6
Major BPS
55.8
0.15
1
63
29.3
Major PPT
66.4
0.37
1.7
76.2
37.8
Minor 5ss
46.7
-0.3
2.5
61.4
43.2
Minor BPS
44.7
-0.3
2.1
64
45.4

Associated Gene:

Gene:
LRSAM1
Ensembl Gene ID:
ENSAPLG00000005497
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046007
1446718 - 1469843
23126
ENSAPLT00000045132
1446718 - 1469843
23126
ENSAPLT00000005710
1447029 - 1470969
23941