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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1463542_1464684_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1463542 - 1464684
Intron Length:
1143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
ATGGCACTAAAT
Flanking Amino Acid:
LAQLQILNVKGNKLKELPAT
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.4
33.4
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
79.7
0.67
0.7
74.5
23.7
Minor 5ss
44.5
-0.6
3.2
63.6
48.1
Minor BPS
45.8
-0.2
2.1
65.86
44

Associated Gene:

Gene:
LRSAM1
Ensembl Gene ID:
ENSAPLG00000005497
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046007
1446718 - 1469843
23126
ENSAPLT00000045132
1446718 - 1469843
23126
ENSAPLT00000005710
1447029 - 1470969
23941