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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1475143_1475772_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1475143 - 1475772
Intron Length:
630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTCGAT
5'SS Class:
major
3'SS Sequence:
TCTTTTCATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTCTTTTCATT
Flanking Amino Acid:
KLTIQNRQAQIEVVPSASAL
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
65.3
40.7
Major BPS
100
1.24
0.5
100
0
Major PPT
86.3
0.82
0.8
85.4
28.2
Minor 5ss
37
-1.5
3.6
55.6
48.6
Minor BPS
53.6
0.19
1.7
71.97
40.1

Associated Gene:

Gene:
RPL12
Ensembl Gene ID:
ENSAPLG00000005450
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005635
1474725 - 1477047
2323