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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1502132_1503370_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1502132 - 1503370
Intron Length:
1239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTATTT
Flanking Amino Acid:
FKILDCRGSMAENMEECIIL
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
81.3
32.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
32.7
-2
3.4
40.8
45.4
Minor BPS
63.8
0.51
1.8
83.73
37.1

Associated Gene:

Gene:
DPH7
Ensembl Gene ID:
ENSAPLG00000027230
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041355
1496392 - 1505435
9044