Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1526464_1527008_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1526464 - 1527008

Intron Length:

545

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTATTGTTT

5'SS Class:

weak_major

3'SS Sequence:

TTCTAAACTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

TGTTTCTAAACT

Flanking Amino Acid:

FEKAGEAVEMDTLKISGTEN

Intron Amino Acid Position:

368

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.9

0.35

1.1

41.4

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

73.7

0.53

0.9

63.8

41.5

Minor 5ss

48.4

-0.1

3.1

64.3

47.2

Minor BPS

0.8

1.6

88.23

36.9

Associated Gene:

Gene:

PNPLA7

Ensembl Gene ID:

ENSAPLG00000003225

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021325

1508012 - 1633005

124994

ENSAPLT00000003431

1508012 - 1633781

125770