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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_16018_16513_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16018 - 16513
Intron Length:
496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTGTCCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
GAGCTCTGATCA
Flanking Amino Acid:
LKEQNRLLTKEVTDKCERIT
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
79
0.72
1
69
38.9
Major PPT
74.2
0.54
1
68.9
37
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
45.9
-0.3
1.7
51.64
39.5

Associated Gene:

Gene:
SAPCD2
Ensembl Gene ID:
ENSAPLG00000005630
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005812
21 - 16642
16622