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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1632646_1633700_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1632646 - 1633700
Intron Length:
1055

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTACGTGCT
5'SS Class:
major
3'SS Sequence:
TTCTCTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
TTTTTTTTCTCT
Flanking Amino Acid:
SSQVDEDSDSDEDMQIRKRK
Intron Amino Acid Position:
1307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
70.3
40.3
Major BPS
62
0.3
1
53
34.1
Major PPT
85.5
0.8
0.6
85.1
22.5
Minor 5ss
34.7
-1.7
3.5
50.7
45.7
Minor BPS
45.5
-0.2
3.6
82.72
39.3

Associated Gene:

Gene:
PNPLA7
Ensembl Gene ID:
ENSAPLG00000003225
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003431
1508012 - 1633781
125770