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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1654148_1661824_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1654148 - 1661824
Intron Length:
7677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTGGATGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTGGAT
U12 Branch Point Sequence:
TTCTGTGGCACT
Flanking Amino Acid:
EAMSSVAAKVRAARAFGEYL
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
67.2
38.1
Major BPS
59.1
0.23
1.4
60.7
45.9
Major PPT
68.6
0.42
1.1
61.8
43.6
Minor 5ss
26.2
-2.7
3.2
34.3
42
Minor BPS
38.8
-0.8
2.6
63.65
47

Associated Gene:

Gene:
NSMF
Ensembl Gene ID:
ENSAPLG00000002458
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021960
1653951 - 1696254
42304
ENSAPLT00000002486
1653951 - 1696254
42304
ENSAPLT00000046240
1653951 - 1696254
42304
ENSAPLT00000028541
1653951 - 1696254
42304