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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1672924_1677299_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1672924 - 1677299
Intron Length:
4376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
AAGTTTTGATCT
Flanking Amino Acid:
ERMYSVDRVSDDVPIRTWFP
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
84.6
0.78
0.7
76.4
32.2
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
48.5
-0
1.7
63.78
40.7

Associated Gene:

Gene:
NSMF
Ensembl Gene ID:
ENSAPLG00000002458
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028541
1653951 - 1696254
42304
ENSAPLT00000021960
1653951 - 1696254
42304
ENSAPLT00000002486
1653951 - 1696254
42304
ENSAPLT00000046240
1653951 - 1696254
42304