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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1688233_1689144_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1688233 - 1689144
Intron Length:
912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TTCTCCTTATCC
Flanking Amino Acid:
GEDFIPPKIMLISSKVPKAE
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
74.7
35.1
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
86.6
0.82
0.7
80.5
24.9
Minor 5ss
29.9
-2.3
3.7
43.1
45.5
Minor BPS
75.6
0.78
1.6
82.19
38.3

Associated Gene:

Gene:
NSMF
Ensembl Gene ID:
ENSAPLG00000002458
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021960
1653951 - 1696254
42304
ENSAPLT00000002486
1653951 - 1696254
42304
ENSAPLT00000046240
1653951 - 1696254
42304
ENSAPLT00000028541
1653951 - 1696254
42304