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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1690273_1690859_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1690273 - 1690859
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGTTGA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TTTTGTTTGTTT
Flanking Amino Acid:
HEHATFDDILEEIEKKLNIY
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
75.2
37.7
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
87.1
0.84
0.8
84.6
36
Minor 5ss
38.5
-1.3
3
50
46.2
Minor BPS
42.8
-0.4
3.6
78.01
39.5

Associated Gene:

Gene:
NSMF
Ensembl Gene ID:
ENSAPLG00000002458
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021960
1653951 - 1696254
42304
ENSAPLT00000002486
1653951 - 1696254
42304
ENSAPLT00000046240
1653951 - 1696254
42304
ENSAPLT00000028541
1653951 - 1696254
42304