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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1694273_1696156_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1694273 - 1696156
Intron Length:
1884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCATTTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCTGCTTCATCT
Flanking Amino Acid:
FESPLELSAQGKQMIETYFD
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
29
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
76.2
0.59
0.8
69.6
36.5
Minor 5ss
42.9
-0.8
2.8
60
44.3
Minor BPS
50
0.08
1.9
71.47
45.8

Associated Gene:

Gene:
NSMF
Ensembl Gene ID:
ENSAPLG00000002458
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002486
1653951 - 1696254
42304
ENSAPLT00000046240
1653951 - 1696254
42304
ENSAPLT00000028541
1653951 - 1696254
42304
ENSAPLT00000021960
1653951 - 1696254
42304