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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1723054_1723514_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1723054 - 1723514
Intron Length:
461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
GCTCACGTAAAA
Flanking Amino Acid:
STLHPSTPNSADLSSYTPKH
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.7
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
89
0.88
0.7
81.2
36.5
Minor 5ss
30.2
-2.3
3.3
36.8
47.7
Minor BPS
44.4
-0.4
2.2
56.09
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017976
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041570
1708269 - 1724742
16474