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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1726776_1728611_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1726776 - 1728611
Intron Length:
1836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGGGG
5'SS Class:
major
3'SS Sequence:
TCTTCTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTGTTTTTATTT
Flanking Amino Acid:
IAETEAAYGKILESSQTLLD
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.2
58.7
46.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.7
0.83
0.7
80
31.9
Minor 5ss
34.2
-1.8
3.6
46.8
48.5
Minor BPS
56.7
0.29
1.6
70.24
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020038
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024745
1726647 - 1728944
2298