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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1730915_1733216_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1730915 - 1733216
Intron Length:
2302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TGGTGCTCACCA
Flanking Amino Acid:
EHSFLNEFQEWIEKVIGWLS
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.7
37
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
82.4
0.73
0.8
76.6
32
Minor 5ss
26.2
-2.7
2.9
29.6
43.4
Minor BPS
46.1
-0.3
2.2
60.13
45.6

Associated Gene:

Gene:
ANAPC2
Ensembl Gene ID:
ENSAPLG00000001836
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001991
1729012 - 1739971
10960