About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1733654_1734141_F


Intron Information:

Intron Rank:
5

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
1733654 - 1734141

Intron Length:
488

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CTG|GTGGGTTTT

5'SS Class:
major

3'SS Sequence:
TCATCTCTTGTAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TGCTCAT

U12 Branch Point Sequence:
GGACACTGAACT

Flanking Amino Acid:
SALEMRLLHPGVNTSDIITL

Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
77.1
0.64
1
76.6
34.9

Major BPS
79.7
0.74
1
79.6
35.6

Major PPT
78.3
0.64
0.8
73.6
31.1

Minor 5ss
39.4
-1.2
3.3
54.1
45.6

Minor BPS
51.1
0.11
1.7
66.99
42.2

Associated Gene:

Gene:
ANAPC2

Ensembl Gene ID:

Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

1729012 - 1739971
10960