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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1734814_1735563_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1734814 - 1735563
Intron Length:
750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTGCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TGTGTCTGATCC
Flanking Amino Acid:
LLHQFNYSAEREIRNVELLK
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
72.6
33
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
82
0.72
0.9
77
37.2
Minor 5ss
32.6
-2
3.2
41.8
45.1
Minor BPS
49.3
-0
1.8
63.5
42

Associated Gene:

Gene:
ANAPC2
Ensembl Gene ID:
ENSAPLG00000001836
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001991
1729012 - 1739971
10960