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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1738148_1738502_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1738148 - 1738502
Intron Length:
355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTGAC
5'SS Class:
major
3'SS Sequence:
GTGGTCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TCCGCTCTGATA
Flanking Amino Acid:
AAIILHFQTKSTWTLTELSE
Intron Amino Acid Position:
663

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1
65.6
34.4
Major BPS
79
0.72
1
69
38.9
Major PPT
73.2
0.52
1
66.1
40.8
Minor 5ss
28.8
-2.4
3.1
30.9
36.7
Minor BPS
46.4
-0.2
1.7
53.8
39.7

Associated Gene:

Gene:
ANAPC2
Ensembl Gene ID:
ENSAPLG00000001836
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001991
1729012 - 1739971
10960