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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1794885_1799322_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1794885 - 1799322
Intron Length:
4438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGGAGC
5'SS Class:
major
3'SS Sequence:
TTCCCATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TGATTGTTACTT
Flanking Amino Acid:
PEPSGTEVNPAICRYPLGMH
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
61.3
40.2
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
83.5
0.75
0.8
80.8
29.9
Minor 5ss
31.4
-2.1
3.4
39.3
41.6
Minor BPS
47.7
-0
2.2
68.65
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015925
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016645
1794821 - 1822696
27876