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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1804964_1807671_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1804964 - 1807671
Intron Length:
2708

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAGAA
5'SS Class:
major
3'SS Sequence:
TCTTTCCTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
GTCTATGTAACT
Flanking Amino Acid:
DSTYDGYQERRHLYGGLGQL
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
67.4
33.5
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
76.7
0.6
0.8
71.2
34.5
Minor 5ss
22.9
-3.1
3.3
28.2
43.9
Minor BPS
50.2
0.09
2.2
73.23
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015925
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016645
1794821 - 1822696
27876