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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1811925_1813141_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1811925 - 1813141
Intron Length:
1217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAGAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
AGTGTCTGACTC
Flanking Amino Acid:
PELSQSAEDSVCSGDYAEPD
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
73.2
30.9
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
86
0.81
0.7
84.9
29.9
Minor 5ss
29.8
-2.3
3.3
38.4
46.6
Minor BPS
45.7
-0.3
1.7
53.59
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015925
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016645
1794821 - 1822696
27876