About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1813387_1816156_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1813387 - 1816156
Intron Length:
2770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGCCA
5'SS Class:
major
3'SS Sequence:
CTGCTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
GCTCTCATAGCT
Flanking Amino Acid:
EKLGEGQFGEVHLCEADGLL
Intron Amino Acid Position:
523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
56.7
42.2
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
81.7
0.71
0.8
76.6
32
Minor 5ss
29.3
-2.4
3.4
39.7
45.8
Minor BPS
48.2
-0
1.9
66.99
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015925
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016645
1794821 - 1822696
27876