Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1816279_1816644_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1816279 - 1816644

Intron Length:

366

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTACA

5'SS Class:

strong_major

3'SS Sequence:

TCTATTTTACAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCTAT

U12 Branch Point Sequence:

TTCTATTTTACA

Flanking Amino Acid:

MLRSDVNKTARNDFLKEIKI

Intron Amino Acid Position:

563

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.1

1.11

0.7

89.8

22.5

Major BPS

73.8

0.59

1.3

72.8

Major PPT

68.2

0.41

1.1

68.5

41.2

Minor 5ss

-1.6

2.6

43.5

43.6

Minor BPS

58.1

0.25

1.8

72.01

39.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015925

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016645

1794821 - 1822696

27876