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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1816843_1819535_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1816843 - 1819535
Intron Length:
2693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCAATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TCATCTTTCAAT
Flanking Amino Acid:
FAISNNIPCVSYSNLLYMAT
Intron Amino Acid Position:
629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
79.5
0.66
0.9
74.7
33.8
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
55.9
0.27
1.9
73.64
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015925
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016645
1794821 - 1822696
27876