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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1836763_1838723_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1836763 - 1838723
Intron Length:
1961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
GTGCTCACACCC
Flanking Amino Acid:
LIPAYTGFVPHLRHTYALTF
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.3
77.7
33.5
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
92.1
0.95
0.7
85.1
34.9
Minor 5ss
41.9
-0.9
2.7
49.9
39.7
Minor BPS
40.8
-0.7
1.9
49.55
40.4

Associated Gene:

Gene:
FAM166A
Ensembl Gene ID:
ENSAPLG00000015922
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016602
1826574 - 1838812
12239