Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1864558_1864813_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1864558 - 1864813

Intron Length:

256

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGCGG

5'SS Class:

strong_major

3'SS Sequence:

TTTGTGTTGGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTGAC

U12 Branch Point Sequence:

CGCTCCCTGACC

Flanking Amino Acid:

EPLKAIEQFQTENGVLLPSL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

60.4

45.8

Major BPS

56.5

0.16

1.1

48.6

36.6

Major PPT

76.3

0.59

1.1

72.9

42.2

Minor 5ss

24.7

-2.9

29.5

43.3

Minor BPS

55.8

0.17

1.7

63.35

42.4

Associated Gene:

Gene:

NELFB

Ensembl Gene ID:

ENSAPLG00000014732

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015400

1864456 - 1875619

11164