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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1871319_1872016_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1871319 - 1872016
Intron Length:
698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCTTC
5'SS Class:
major
3'SS Sequence:
CAATCCCTCTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
CTCTCTTCAATC
Flanking Amino Acid:
DSQVFKEPKMEVELITKFLP
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
0.9
71
35.7
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
58.4
0.19
1
60.6
35
Minor 5ss
43.1
-0.8
3
55.7
43.3
Minor BPS
60.2
0.3
1.6
65.76
40.9

Associated Gene:

Gene:
NELFB
Ensembl Gene ID:
ENSAPLG00000014732
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015400
1864456 - 1875619
11164