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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1874328_1875115_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1874328 - 1875115
Intron Length:
788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCTG
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGTTCTAAAATT
Flanking Amino Acid:
FDGFFLTACSRKENVHRHVL
Intron Amino Acid Position:
496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
75.1
41.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
81.6
0.71
0.9
76.5
37.5
Minor 5ss
37.2
-1.4
3.1
49.5
46.7
Minor BPS
54.7
0.22
1.9
77.32
39.6

Associated Gene:

Gene:
NELFB
Ensembl Gene ID:
ENSAPLG00000014732
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015400
1864456 - 1875619
11164