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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_189379_189989_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
189379 - 189989
Intron Length:
611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
GGTTGTATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTAAAT
U12 Branch Point Sequence:
AAATACTGAGCC
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
70
0.5
1.1
76.9
32.8
Major PPT
68.9
0.43
1
59.3
46
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
47.4
-0.2
1.8
57.75
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002251
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002322
189196 - 192655
3460